PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 230aa    MW: 26148.1 Da    PI: 9.6025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26070.24.3e-221810020101
           DUF260  20 pyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                      +++ + +++ ++ n+++lFG++n+  +++a+ +e+r+d+mss+ yeA+ +ar+P++Ga+gv+++l++++e++ a+l++l+++l
  ONIVA01G22770.1  18 RVILHgDEKVRLLNAQHLFGTRNIRCFVQATLPEKRDDLMSSIKYEAQLWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 100
                      444332668999******************************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.9481100IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-172197IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRHLQGAEDG VLAGVPARVI LHGDEKVRLL NAQHLFGTRN IRCFVQATLP EKRDDLMSSI  60
KYEAQLWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SILEAKGVGV  120
RQVTSKEQEQ ERQYQACPAR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV  180
GQIQEEAINH DAEDAHYDFF PLQAHLVLDS PRNPHPLGRP PLTRSHNVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FND61e-173A0A0E0FND6_ORYNI; Uncharacterized protein
STRINGLOC_Os01g39180.11e-163(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1987288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.17e-09LOB domain-containing protein 7